DCC 0.5.0-foss-2021b

DCC is a python package intended to detect and quantify circRNAs with high specificity. DCC works with the STAR (Dobin et al., 2013) chimeric.out.junction files which contains chimerically aligned reads including circRNA junction spanning reads.

Accessing DCC 0.5.0-foss-2021b

To load the module for DCC 0.5.0-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2021b
module load DCC/0.5.0-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the DCC website.

Dependencies

This version of DCC has a direct dependency on: foss/2021b HTSeq/0.11.3-foss-2021b Pysam/0.17.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Last modified on 20th July 2022