epiAneufinder 1.0.1-foss-2021b-R-4.2.0

epiAneufinder is an algorithm used for calling Copy Number Variations (CNVs) from single-cell ATAC (scATAC) data.

Accessing epiAneufinder 1.0.1-foss-2021b-R-4.2.0

To load the module for epiAneufinder 1.0.1-foss-2021b-R-4.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load epiAneufinder/1.0.1-foss-2021b-R-4.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • epiAneufinder 1.0.1
  • plyranges 1.20.0

More Information

For more information visit the epiAneufinder website.

Dependencies

This version of epiAneufinder has a direct dependency on: foss/2021b R/4.2.0-foss-2021b R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0

Last modified on 23rd October 2023