RAPID fcd9e9b-foss-2020a-R-4.0.0

Risk Assessment Population IDentification (RAPID) is an unsupervised, machine learning algorithm that identifies single cell phenotypes and assesses clinical risk stratification as a continuous variable.

Accessing RAPID fcd9e9b-foss-2020a-R-4.0.0

To load the module for RAPID fcd9e9b-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load RAPID/fcd9e9b-foss-2020a-R-4.0.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • exactRankTests-0.8-31
  • km.ci-0.5-2
  • KMsurv-0.1-5
  • maxstat-0.7-25
  • RAPID fcd9e9b
  • survminer 0.4.8
  • survMisc 0.5.5

More Information

For more information visit the RAPID website.

Dependencies

This version of RAPID has a direct dependency on: foss/2020a R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0

Last modified on 30th July 2020