CellChat 20210814-foss-2020a-R-4.0.0

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data.

Accessing CellChat 20210814-foss-2020a-R-4.0.0

To load the module for CellChat 20210814-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load CellChat/20210814-foss-2020a-R-4.0.0

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • CellChat 20210814
  • circlize 0.4.13
  • cpp11 0.4.0
  • ggalluvial 0.12.3
  • GlobalOptions 0.1.2
  • NMF 0.23.0
  • svglite 2.0.0
  • systemfonts 1.0.2

More Information

For more information visit the CellChat website.

Dependencies

This version of CellChat has a direct dependency on: foss/2020a R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0

Other Versions

These versions of CellChat are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.6.0-foss-2021b-R-4.2.0 2021b

Last modified on 5th October 2021