MAJIQ 2.2-foss-2020a-54fd98d-Python-3.8.2

MAJIQ and Voila are two software packages that together detect, quantify, and visualize local splicing variations (LSV) from RNA-Seq data.

Accessing MAJIQ 2.2-foss-2020a-54fd98d-Python-3.8.2

To load the module for MAJIQ 2.2-foss-2020a-54fd98d-Python-3.8.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load MAJIQ/2.2-foss-2020a-54fd98d-Python-3.8.2

BEAR Apps Version

2020a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • Click 7.0
  • Cython 0.29.14
  • Flask 1.0.2
  • Flask-Session-0.3.1
  • Flask-WTF-0.14.2
  • gitdb2 2.0.6
  • GitPython 3.0.5
  • gunicorn 19.9.0
  • itsdangerous 1.1.0
  • Jinja2 2.11.1
  • MAJIQ 2.2
  • numpy 1.18.1
  • psutil 5.6.7
  • smmap2 2.0.5
  • waitress 1.1.0
  • Werkzeug 0.16.0
  • WTForms 2.2.1

More Information

For more information visit the MAJIQ website.

Dependencies

This version of MAJIQ has a direct dependency on: foss/2020a h5py/2.10.0-foss-2020a-Python-3.8.2 HTSlib/1.10.2-GCC-9.3.0 Python/3.8.2-GCCcore-9.3.0 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2

Last modified on 25th February 2021