GATK 4.4.0.0-GCCcore-12.2.0-Java-17

The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

Accessing GATK 4.4.0.0-GCCcore-12.2.0-Java-17

To load the module for GATK 4.4.0.0-GCCcore-12.2.0-Java-17 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022b
module load GATK/4.4.0.0-GCCcore-12.2.0-Java-17

BEAR Apps Version

2022b

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the GATK website.

Dependencies

This version of GATK has a direct dependency on: GCCcore/12.2.0 Java/17 Python/3.10.8-GCCcore-12.2.0

Other Versions

These versions of GATK are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 6th October 2023