GATK 22.214.171.124-GCCcore-12.2.0-Java-17The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
Accessing GATK 126.96.36.199-GCCcore-12.2.0-Java-17
To load the module for GATK 188.8.131.52-GCCcore-12.2.0-Java-17 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load bear-apps/2022b
module load GATK/184.108.40.206-GCCcore-12.2.0-Java-17
BEAR Apps Version
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
For more information visit the GATK website.
Last modified on 6th October 2023