pept 0.5.1-foss-2022b

A Python library that integrates all the tools necessary to perform research using Positron Emission Particle Tracking (PEPT). The library includes algorithms for the location, identification and tracking of particles, in addition to tools for visualisation and analysis, and utilities allowing the realistic simulation of PEPT data.

Accessing pept 0.5.1-foss-2022b

To load the module for pept 0.5.1-foss-2022b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022b
module load pept/0.5.1-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • hdbscan 0.8.33
  • konigcell 0.2.1
  • natsort 8.4.0
  • pept 0.5.1

More Information

For more information visit the pept website.

Dependencies

This version of pept has a direct dependency on: cma/3.3.0-foss-2022b foss/2022b matplotlib/3.7.0-gfbf-2022b plotly.py/5.13.1-GCCcore-12.2.0 Python/3.10.8-GCCcore-12.2.0 scikit-learn/1.2.1-gfbf-2022b SciPy-bundle/2023.02-gfbf-2022b tqdm/4.64.1-GCCcore-12.2.0

Other Versions

These versions of pept are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th September 2023