Salmon 1.10.1-GCC-12.2.0

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.

Accessing Salmon 1.10.1-GCC-12.2.0

To load the module for Salmon 1.10.1-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b module load Salmon/1.10.1-GCC-12.2.0

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Salmon website.

Dependencies

This version of Salmon has a direct dependency on: Boost/1.81.0-GCC-12.2.0 bzip2/1.0.8-GCCcore-12.2.0 cURL/7.86.0-GCCcore-12.2.0 GCC/12.2.0 libiconv/1.17-GCCcore-12.2.0 tbb/2021.10.0-GCCcore-12.2.0 XZ/5.2.7-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of Salmon is a direct dependent of: Trinity/2.15.1-foss-2022b

Other Versions

These versions of Salmon are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.9.0-GCC-11.3.0	2022a
1.9.0-GCC-11.2.0	2021b
1.5.2-gompi-2020b	2020b
1.1.0-gompi-2019b	2019b
0.12.0-foss-2018b	2018b

Last modified on 2nd February 2024