There is a newer version of SalmonSalmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.
Accessing Salmon 1.1.0-gompi-2019b
To load the module for Salmon 1.1.0-gompi-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Salmon/1.1.0-gompi-2019b
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the Salmon website.
This version of Salmon has a direct dependency on: Boost/1.71.0-gompi-2019b gompi/2019b tbb/2019_U9-GCCcore-8.3.0
This version of Salmon is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 Trinity/2.9.1-foss-2019b-Python-2.7.16 Trinity/2.9.1-foss-2019b-Python-3.7.4
These versions of Salmon are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 12th October 2020