Battenberg 2.2.9-foss-2022b-R-4.3.1

A whole genome sequencing subclonal copy number caller

Accessing Battenberg 2.2.9-foss-2022b-R-4.3.1

To load the module for Battenberg 2.2.9-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load Battenberg/2.2.9-foss-2022b-R-4.3.1

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• Battenberg 2.2.9
• copynumber 1.36.0

More Information

For more information visit the Battenberg website.

Dependencies

This version of Battenberg has a direct dependency on: alleleCount/4.3.0-GCC-12.2.0 ASCAT/3.1.2-foss-2022b-R-4.3.1 cURL/7.86.0-GCCcore-12.2.0 foss/2022b HTSlib/1.17-GCC-12.2.0 IMPUTE2/2.3.2_x86_64_static libxml2/2.10.3-GCCcore-12.2.0 R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1

Last modified on 1st March 2024