ASCAT 3.1.2-foss-2022b-R-4.3.1

ASCAT is a method to derive copy number profiles of tumor cells, accounting for normal cell admixture and tumor aneuploidy.

Accessing ASCAT 3.1.2-foss-2022b-R-4.3.1

To load the module for ASCAT 3.1.2-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load ASCAT/3.1.2-foss-2022b-R-4.3.1

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the ASCAT website.

Dependencies

This version of ASCAT has a direct dependency on: alleleCount/4.3.0-GCC-12.2.0 foss/2022b R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1

Required By

This version of ASCAT is a direct dependent of: Battenberg/2.2.9-foss-2022b-R-4.3.1

Last modified on 1st March 2024