alleleCount 4.3.0-GCC-12.2.0

The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg. As of v4 the perl code wraps the C implementation of allele counting code for BAM/CRAM processing.

Accessing alleleCount 4.3.0-GCC-12.2.0

To load the module for alleleCount 4.3.0-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load alleleCount/4.3.0-GCC-12.2.0

BEAR Apps Version




The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.


  • Const::Fast 0.014
  • Devel::Cover 1.40
  • Devel::Symdump 2.18
  • Pod::Coverage 0.23
  • Pod::Parser 1.66

More Information

For more information visit the alleleCount website.


This version of alleleCount has a direct dependency on: GCC/12.2.0 HTSlib/1.17-GCC-12.2.0 libdeflate/1.15-GCCcore-12.2.0 Perl/5.36.0-GCCcore-12.2.0

Required By

This version of alleleCount is a direct dependent of: ASCAT/3.1.2-foss-2022b-R-4.3.1 Battenberg/2.2.9-foss-2022b-R-4.3.1

Last modified on 1st March 2024