picard 2.27.5-Java-11

A set of tools (in Java) for working with next generation sequencing data in the BAM format.

Accessing picard 2.27.5-Java-11

To load the module for picard 2.27.5-Java-11 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022b
module load picard/2.27.5-Java-11

BEAR Apps Version

2022b

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

CollectInsertSizeMetrics

If you want to use CollectInsertSizeMetrics then you must load R please select a version of R in the same BEAR Apps Version as picard.

More Information

For more information visit the picard website.

Dependencies

This version of picard has a direct dependency on: Java/11

Other Versions

These versions of picard are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 22nd November 2023