There is a newer version of picardA set of tools (in Java) for working with next generation sequencing data in the BAM format.
Accessing picard 2.21.1-Java-11
To load the module for picard 2.21.1-Java-11 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load picard/2.21.1-Java-11
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the picard website.
This version of picard has a direct dependency on: Java/11
This version of picard is a direct dependent of: BatVI/1.02-foss-2019a gtex-pipeline/gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
These versions of picard are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 14th November 2019