QuPath 0.4.4-Java-17

There is a newer version of QuPath

QuPath is open source software for bioimage analysis.Tools to annotate and view images, including whole slide & microscopy images Workflows for brightfield & fluorescence image analysis; New algorithms for common tasks, including cell segmentation, tissue microarray dearraying Interactive machine learning for both object & pixel classification; Customization, batch-processing & data interrogation by scripting; Easy integration with other tools, including ImageJ

Accessing QuPath 0.4.4-Java-17

To load the module for QuPath 0.4.4-Java-17 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022b
module load QuPath/0.4.4-Java-17

BEAR Apps Version

2022b

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the QuPath website.

Dependencies

This version of QuPath has a direct dependency on: Groovy/4.0.15-Java-17 Java/17

Other Versions

These versions of QuPath are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.5.0-Java-17 2022a
0.3.2-Java-11 2021b

Last modified on 3rd October 2023