QuPath 0.3.2-Java-11QuPath is open source software for bioimage analysis.Tools to annotate and view images, including whole slide & microscopy images Workflows for brightfield & fluorescence image analysis; New algorithms for common tasks, including cell segmentation, tissue microarray dearraying Interactive machine learning for both object & pixel classification; Customization, batch-processing & data interrogation by scripting; Easy integration with other tools, including ImageJ
Accessing QuPath 0.3.2-Java-11
To load the module for QuPath 0.3.2-Java-11 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps/2021b
module load QuPath/0.3.2-Java-11
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the QuPath website.
Last modified on 27th June 2022