baysorBaysor is a tool for performing cell segmentation on imaging-based spatial transcriptomics data. It optimizes segmentation considering the likelihood of transcriptional composition, size and shape of the cell. The approach can take into account nuclear or cytoplasm staining, however, can also perform segmentation based on the detected molecules alone.
For more information visit the baysor website.
These versions of baysor are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.