TransDecoder 5.7.1-GCC-12.2.0

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Accessing TransDecoder 5.7.1-GCC-12.2.0

To load the module for TransDecoder 5.7.1-GCC-12.2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load TransDecoder/5.7.1-GCC-12.2.0

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the TransDecoder website.

Dependencies

This version of TransDecoder has a direct dependency on: CD-HIT/4.8.1-GCC-12.2.0 GCC/12.2.0 Perl/5.36.0-GCCcore-12.2.0

Required By

This version of TransDecoder is a direct dependent of: Trinotate/4.0.2-foss-2022b

Other Versions

These versions of TransDecoder are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 2nd February 2024