vcflib 1.0.9-foss-2022a-R-4.2.3

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals.

Accessing vcflib 1.0.9-foss-2022a-R-4.2.3

To load the module for vcflib 1.0.9-foss-2022a-R-4.2.3 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load vcflib/1.0.9-foss-2022a-R-4.2.3

BEAR Apps Version

2022a

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the vcflib website.

Dependencies

This version of vcflib has a direct dependency on: bzip2/1.0.8-GCCcore-11.3.0 fastahack/1.0.0-GCCcore-11.3.0 filevercmp/20191210-GCCcore-11.3.0 foss/2022a fsom/20151117-GCCcore-11.3.0 HTSlib/1.15.1-GCC-11.3.0 intervaltree/0.1-GCCcore-11.3.0 multichoose/1.0.3-GCCcore-11.3.0 Perl/5.34.1-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 R/4.2.3-foss-2022a smithwaterman/20160702-GCCcore-11.3.0 tabixpp/1.1.2-GCC-11.3.0 WFA2/2.3.3-GCCcore-11.3.0 XZ/5.2.5-GCCcore-11.3.0 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of vcflib is a direct dependent of: freebayes/1.3.7-foss-2022a-R-4.2.3

Last modified on 3rd November 2023