VEP 107-GCC-11.3.0
VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.Accessing VEP 107-GCC-11.3.0
To load the module for VEP 107-GCC-11.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022a
module load VEP/107-GCC-11.3.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- Bio::EnsEMBL::XS 2.3.2
More Information
For more information visit the VEP website.
Dependencies
This version of VEP has a direct dependency on: Archive-Zip/1.68-GCCcore-11.3.0 Bio-DB-HTS/3.01-GCC-11.3.0 BioPerl/1.7.8-GCCcore-11.3.0 Compress-Raw-Zlib/2.202-GCCcore-11.3.0 DBD-mysql/4.050-GCC-11.3.0 GCC/11.3.0 Perl/5.34.1-GCCcore-11.3.0
Other Versions
These versions of VEP are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 99.2-foss-2019b-Perl-5.30.0 | 2019b |
| 96.0-foss-2019a-Perl-5.28.1 | 2019a |
Last modified on 19th October 2023