VEP 99.2-foss-2019b-Perl-5.30.0

There is a newer install of VEP

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

Accessing VEP 99.2-foss-2019b-Perl-5.30.0

To load the module for VEP 99.2-foss-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load VEP/99.2-foss-2019b-Perl-5.30.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• Archive::Zip 1.68
• Bio::EnsEMBL::XS 2.3.2
• ExtUtils::CppGuess 0.21
• ExtUtils::MakeMaker 7.44
• Set::IntervalTree 0.12
• SUPER 1.20190531
• Test::MockModule 0.172.0

More Information

For more information visit the VEP website.

Dependencies

This version of VEP has a direct dependency on: Bio-DB-BigFile/1.07-foss-2019b-Perl-5.30.0 Bio-DB-HTS/3.01-GCCcore-8.3.0-Perl-5.30.0 BioPerl/1.7.2-GCCcore-8.3.0 DBD-mysql/4.050-foss-2019b-Perl-5.30.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0

Required By

This version of VEP is a direct dependent of: vcf2maf/1.6.18-foss-2019b-Perl-5.30.0

Other Versions

These versions of VEP are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd April 2020