VEP 99.2-foss-2019b-Perl-5.30.0VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.
Accessing VEP 99.2-foss-2019b-Perl-5.30.0
To load the module for VEP 99.2-foss-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load VEP/99.2-foss-2019b-Perl-5.30.0
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- Archive::Zip 1.68
- Bio::EnsEMBL::XS 2.3.2
- ExtUtils::CppGuess 0.21
- ExtUtils::MakeMaker 7.44
- Set::IntervalTree 0.12
- SUPER 1.20190531
- Test::MockModule 0.172.0
For more information visit the VEP website.
This version of VEP has a direct dependency on: Bio-DB-BigFile/1.07-foss-2019b-Perl-5.30.0 Bio-DB-HTS/3.01-GCCcore-8.3.0-Perl-5.30.0 BioPerl/1.7.2-GCCcore-8.3.0 DBD-mysql/4.050-foss-2019b-Perl-5.30.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0
This version of VEP is a direct dependent of: vcf2maf/1.6.18-foss-2019b-Perl-5.30.0
These versions of VEP are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 3rd April 2020