Perl 5.30.0-GCCcore-8.3.0

There is a newer version of Perl

Larry Wall's Practical Extraction and Report Language

Accessing Perl 5.30.0-GCCcore-8.3.0

To load the module for Perl 5.30.0-GCCcore-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Perl/5.30.0-GCCcore-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • Algorithm::Dependency 1.111
  • Algorithm::Diff 1.1903
  • aliased 0.34
  • AnyData 0.12
  • AnyEvent 7.16
  • App::Cmd 0.331
  • App::cpanminus 1.7044
  • AppConfig 1.71
  • Archive::Extract 0.80
  • Array::Utils 0.5
  • Authen::SASL 2.16
  • B::Hooks::EndOfScope 0.24
  • B::Lint 1.20
  • boolean 0.46
  • Bundle::BioPerl 2.1.9
  • Canary::Stability 2013
  • Capture::Tiny 0.48
  • Carp 1.50
  • Carp::Clan 6.07
  • Class::Accessor 0.51
  • Class::Data::Inheritable 0.08
  • Class::DBI v3.0.17
  • Class::DBI::SQLite 0.11
  • Class::Inspector 1.36
  • Class::ISA 0.36
  • Class::Load 0.25
  • Class::Load::XS 0.10
  • Class::Singleton 1.5
  • Class::Trigger 0.14
  • Clone 0.43
  • Clone::Choose 0.010
  • Config::General 2.63
  • Config::INI 0.025
  • Config::MVP 2.200011
  • Config::Tiny 2.24
  • CPANPLUS 0.9178
  • Crypt::DES 2.07
  • Crypt::Rijndael 1.14
  • Cwd::Guard 0.05
  • Data::Dump 1.23
  • Data::Dumper::Concise 2.023
  • Data::Grove 0.08
  • Data::OptList 0.110
  • Data::Section 0.200007
  • Data::Section::Simple 0.07
  • Data::Stag 0.14
  • Data::Types 0.17
  • Data::UUID 1.224
  • Date::Handler 1.2
  • Date::Language 2.30
  • DateTime 1.51
  • DateTime::Locale 1.24
  • DateTime::TimeZone 2.37
  • DateTime::Tiny 1.07
  • DBD::AnyData 0.110
  • DBD::SQLite 1.64
  • DBI 1.642
  • DBIx::Admin::TableInfo 3.03
  • DBIx::ContextualFetch 1.03
  • DBIx::Simple 1.37
  • Devel::CheckCompiler 0.07
  • Devel::CheckLib 1.13
  • Devel::GlobalDestruction 0.14
  • Devel::OverloadInfo 0.005
  • Devel::StackTrace 2.04
  • Digest::HMAC 1.03
  • Digest::MD5::File 0.08
  • Digest::SHA1 2.13
  • Dist::CheckConflicts 0.11
  • Dist::Zilla 6.012
  • Email::Date::Format 1.005
  • Encode::Locale 1.05
  • Error 0.17028
  • Eval::Closure 0.14
  • Exception::Class 1.44
  • Expect 1.35
  • Exporter 5.73
  • Exporter::Declare 0.114
  • Exporter::Tiny 1.002001
  • ExtUtils::Config 0.008
  • ExtUtils::Helpers 0.026
  • ExtUtils::InstallPaths 0.012
  • Fennec::Lite 0.004
  • File::CheckTree 4.42
  • File::Copy::Recursive 0.45
  • File::Copy::Recursive::Reduced 0.006
  • File::Find::Rule 0.34
  • File::Find::Rule::Perl 1.15
  • File::Grep 0.02
  • File::HomeDir 1.004
  • File::Listing 6.04
  • File::Next 1.18
  • File::Path 2.16
  • File::pushd 1.016
  • File::Remove 1.58
  • File::ShareDir 1.116
  • File::ShareDir::Install 0.13
  • File::Slurp 9999.28
  • File::Slurp::Tiny 0.004
  • File::Slurper 0.012
  • File::Spec 3.75
  • File::Temp 0.2309
  • File::Which 1.23
  • Font::TTF 1.06
  • Getopt::Long 2.51
  • Getopt::Long::Descriptive 0.104
  • Git 0.42
  • GO 0.04
  • GO::Utils 0.15
  • Graph 0.9704
  • Graph::ReadWrite 2.09
  • Hash::Merge 0.300
  • HTML::Entities::Interpolate 1.10
  • HTML::Form 6.04
  • HTML::Parser 3.72
  • HTML::Tagset 3.20
  • HTML::Tree 5.07
  • HTTP::Cookies 6.04
  • HTTP::Daemon 6.06
  • HTTP::Date 6.02
  • HTTP::Negotiate 6.01
  • HTTP::Request 6.18
  • HTTP::Tiny 0.076
  • Ima::DBI 0.35
  • Import::Into 1.002005
  • IO::HTML 1.001
  • IO::Socket::SSL 2.066
  • IO::String 1.08
  • IO::Stringy 2.111
  • IO::Tty 1.12
  • IPC::Run 20180523.0
  • IPC::Run3 0.048
  • JSON 4.02
  • Lingua::EN::PluralToSingular 0.21
  • List::AllUtils 0.15
  • List::MoreUtils 0.428
  • List::SomeUtils 0.56
  • List::UtilsBy 0.11
  • Log::Dispatch 2.68
  • Log::Dispatchouli 2.019
  • Log::Handler 0.88
  • Log::Log4perl 1.49
  • Log::Message 0.08
  • Log::Message::Simple 0.10
  • Logger::Simple 2.0
  • LWP::MediaTypes 6.04
  • LWP::Simple 6.39
  • Mail::Util 2.21
  • Math::Bezier 0.01
  • Math::CDF 0.1
  • Math::Round 0.07
  • Math::VecStat 0.08
  • Meta::Builder 0.004
  • MIME::Lite 3.030
  • MIME::Types 2.17
  • Mixin::Linewise::Readers 0.108
  • Mock::Quick 1.111
  • Module::Build 0.4229
  • Module::Build::Tiny 0.039
  • Module::Build::XSUtil 0.19
  • Module::Implementation 0.09
  • Module::Install 1.19
  • Module::Pluggable 5.2
  • Module::Runtime 0.016
  • Moo 2.003004
  • Moose 2.2011
  • MooseX::LazyRequire 0.11
  • MooseX::OneArgNew 0.005
  • MooseX::Role::Parameterized 1.11
  • MooseX::SetOnce 0.200002
  • MooseX::Types 0.50
  • MooseX::Types::Perl 0.101343
  • Mouse v2.5.9
  • MRO::Compat 0.13
  • namespace::autoclean 0.29
  • namespace::clean 0.27
  • Net::HTTP 6.19
  • Net::SMTP::SSL 1.04
  • Net::SNMP v6.0.1
  • Net::SSLeay 1.88
  • Number::Compare 0.03
  • Number::Format 1.75
  • Object::Accessor 0.48
  • Object::InsideOut 4.05
  • Package::Constants 0.06
  • Package::DeprecationManager 0.17
  • Package::Stash 0.38
  • Package::Stash::XS 0.29
  • Parallel::ForkManager 2.02
  • Params::Util 1.07
  • Params::Validate 1.29
  • Params::ValidationCompiler 0.30
  • Parse::RecDescent 1.967015
  • Path::Tiny 0.108
  • PDF::API2 2.035
  • PerlIO::utf8_strict 0.007
  • Pod::Elemental 0.103004
  • Pod::Eventual 0.094001
  • Pod::LaTeX 0.61
  • Pod::Plainer 1.04
  • Pod::POM 2.01
  • Pod::Weaver 4.015
  • Readonly 2.05
  • Regexp::Common 2017060201
  • Role::HasMessage 0.006
  • Role::Identifiable::HasIdent 0.007
  • Role::Tiny 2.000008
  • Scalar::List::Utils 1.52
  • Scalar::Util::Numeric 0.40
  • Set::Array 0.30
  • Set::IntSpan 1.19
  • Set::IntSpan::Fast 1.15
  • Set::Scalar 1.29
  • Shell 0.73
  • Software::License 0.103014
  • Specio 0.44
  • SQL::Abstract 1.86
  • SQL::Statement 1.412
  • Statistics::Basic 1.6611
  • Statistics::Descriptive 3.0702
  • strictures 2.000006
  • String::Flogger 1.101245
  • String::RewritePrefix 0.007
  • String::Truncate 1.100602
  • Sub::Exporter 0.987
  • Sub::Exporter::ForMethods 0.100052
  • Sub::Exporter::Progressive 0.001013
  • Sub::Identify 0.14
  • Sub::Install 0.928
  • Sub::Name 0.21
  • Sub::Quote 2.006003
  • Sub::Uplevel 0.2800
  • Sub::Uplevel 0.2800
  • SVG 2.84
  • Switch 2.17
  • Template 2.29
  • Template::Plugin::Number::Format 1.06
  • Term::Encoding 0.03
  • Term::ReadKey 2.38
  • Term::UI 0.46
  • Test::ClassAPI 1.07
  • Test::Deep 1.128
  • Test::Differences 0.67
  • Test::Exception 0.43
  • Test::Exception::LessClever 0.009
  • Test::Fatal 0.014
  • Test::Harness 3.42
  • Test::LeakTrace 0.16
  • Test::Most 0.35
  • Test::NoWarnings 1.04
  • Test::Output 1.031
  • Test::Pod 1.52
  • Test::Requires 0.10
  • Test::Simple 1.302168
  • Test::Version 2.09
  • Test::Warn 0.36
  • Test::Warnings 0.026
  • Text::Aligner 0.13
  • Text::Balanced 2.03
  • Text::CSV 2.00
  • Text::Diff 1.45
  • Text::Format 0.61
  • Text::Glob 0.11
  • Text::Iconv 1.7
  • Text::Soundex 3.05
  • Text::Table 1.133
  • Text::Template 1.57
  • Thread::Queue 3.13
  • Throwable 0.200013
  • Tie::Function 0.02
  • Tie::IxHash 1.23
  • Time::HiRes 1.9760
  • Time::Piece 1.33
  • Time::Piece::MySQL 0.06
  • Tree::DAG_Node 1.31
  • Try::Tiny 0.30
  • UNIVERSAL::moniker 0.08
  • URI 1.76
  • version 0.9924
  • Want 0.29
  • WWW::RobotRules 6.02
  • XML::Bare 0.53
  • XML::DOM 1.46
  • XML::Filter::BufferText 1.01
  • XML::NamespaceSupport 1.12
  • XML::Parser 2.44
  • XML::RegExp 0.04
  • XML::SAX 1.02
  • XML::SAX::Base 1.09
  • XML::SAX::Writer 0.57
  • XML::Simple 2.25
  • XML::Tiny 2.07
  • XML::Twig 3.52
  • XML::XPath 1.44
  • YAML 1.29
  • YAML::Tiny 1.73

More Information

For more information visit the Perl website.

Dependencies

This version of Perl has a direct dependency on: DB/18.1.32-GCCcore-8.3.0 expat/2.2.7-GCCcore-8.3.0 GCCcore/8.3.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of Perl is a direct dependent of: any2fasta/0.4.2-GCCcore-8.3.0 Bio-DB-BigFile/1.07-foss-2019b-Perl-5.30.0 Bio-DB-HTS/3.01-GCCcore-8.3.0-Perl-5.30.0 BioPerl/1.7.2-GCCcore-8.3.0-Perl-5.30.0 BioPerl/1.7.2-GCCcore-8.3.0 Bismark/0.22.3-foss-2019b BWA/0.7.17-GCC-8.3.0 canu/1.9-GCCcore-8.3.0-Perl-5.30.0 CD-HIT/4.8.1-GCC-8.3.0 DBD-mysql/4.050-foss-2019b-Perl-5.30.0 EVidenceModeler/1.1.1-GCCcore-8.3.0 FastQ_Screen/0.14.1-foss-2019b-Perl-5.30.0 funannotate/1.8.1-foss-2019b-Python-3.7.4 funannotate/1.8.1-foss-2019b-Python-2.7.16 GDGraph/1.54-foss-2019b-Perl-5.30.0 GeneMark-ET/4.61-GCCcore-8.3.0 git/2.23.0-GCCcore-8.3.0-nodocs HOMER/4.11-foss-2019b InterProScan/5.31-70.0-GCCcore-8.3.0-Python-3.7.4-Java-1.8 intltool/0.51.0-GCCcore-8.3.0 Kraken2/2.0.9-beta-gompi-2019b-Perl-5.30.0 miREvo/f2abc2a-GCCcore-8.3.0-Perl-5.30.0 MIRTK/20210104-foss-2019b-Python-3.7.4 MIRTK/20210104-fosscuda-2019b-Python-3.7.4 mlst/2.19.0-foss-2019b parallel/20190922-GCCcore-8.3.0 PASApipeline/2.4.1-foss-2019b PRINSEQ/0.20.4-foss-2019b-Perl-5.30.0 Proteinortho/6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0 Proteinortho/6.0.23-foss-2019b-Python-3.7.4-Perl-5.30.0 RepeatMasker/4.0.9-p2-gompi-2019b-HMMER RSEM/1.3.2-foss-2019b samclip/0.4.0-GCCcore-8.3.0-Perl-5.30.0 Scalpel/0.5.4-GCCcore-8.3.0 snippy/4.6.0-foss-2019b-Perl-5.30.0 texlive/20200406-foss-2019b TransDecoder/5.5.0-foss-2019b-Perl-5.30.0 Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4 Trinity/2.9.1-foss-2019b-Python-2.7.16 Trinity/2.9.1-foss-2019b-Python-3.7.4 VASP/5.4.4-iomklc-2019b-VTST-180-Python-3.7.4-Perl-5.30.0 VASP/5.4.4-iomkl-2019b-VTST-180-Python-3.7.4-Perl-5.30.0 vcf2maf/1.6.18-foss-2019b-Perl-5.30.0 VEP/99.2-foss-2019b-Perl-5.30.0 WRF/4.1.3-foss-2019b-dmpar XML-LibXML/2.0201-GCCcore-8.3.0

Other Versions

These versions of Perl are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 19th November 2019