FastQ_Screen 0.14.1-foss-2019b-Perl-5.30.0

FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.

Accessing FastQ_Screen 0.14.1-foss-2019b-Perl-5.30.0

To load the module for FastQ_Screen 0.14.1-foss-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load FastQ_Screen/0.14.1-foss-2019b-Perl-5.30.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the FastQ_Screen website.

Dependencies

This version of FastQ_Screen has a direct dependency on: Bismark/0.22.3-foss-2019b Bowtie/1.2.3-GCC-8.3.0 Bowtie2/2.3.5.1-GCC-8.3.0 BWA/0.7.17-GCC-8.3.0 foss/2019b GDGraph/1.54-foss-2019b-Perl-5.30.0 gzip/1.10-GCCcore-8.3.0 Perl/5.30.0-GCCcore-8.3.0 SAMtools/1.10-GCC-8.3.0

Last modified on 10th July 2020