canu 1.9-GCCcore-8.3.0-Perl-5.30.0

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences

Accessing canu 1.9-GCCcore-8.3.0-Perl-5.30.0

To load the module for canu 1.9-GCCcore-8.3.0-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load canu/1.9-GCCcore-8.3.0-Perl-5.30.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the canu website.

Dependencies

This version of canu has a direct dependency on: GCCcore/8.3.0 gnuplot/5.2.8-GCCcore-8.3.0 Java/11 Perl/5.30.0-GCCcore-8.3.0

Last modified on 23rd January 2020