Proteinortho 6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0

There is a newer version of Proteinortho

Proteinortho is a tool to detect orthologous genes within different species.

Accessing Proteinortho 6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0

To load the module for Proteinortho 6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Proteinortho/6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Proteinortho website.

Dependencies

This version of Proteinortho has a direct dependency on: DIAMOND/0.9.30-GCC-8.3.0 foss/2019b Kent_tools/401-foss-2019b Perl/5.30.0-GCCcore-8.3.0 Python/2.7.16-GCCcore-8.3.0 RMBlast/2.9.0-gompi-2019b

Required By

This version of Proteinortho is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16

Other Versions

These versions of Proteinortho are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 19th October 2020