RMBlast 2.9.0-gompi-2019bRMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and RepeatModeler.
Accessing RMBlast 2.9.0-gompi-2019b
To load the module for RMBlast 2.9.0-gompi-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load RMBlast/2.9.0-gompi-2019b
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the RMBlast website.
This version of RMBlast has a direct dependency on: Boost/1.71.0-gompi-2019b bzip2/1.0.8-GCCcore-8.3.0 GMP/6.1.2-GCCcore-8.3.0 gompi/2019b libjpeg-turbo/2.0.3-GCCcore-8.3.0 libpng/1.6.37-GCCcore-8.3.0 LMDB/0.9.24-GCCcore-8.3.0 PCRE/8.43-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0
This version of RMBlast is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 Proteinortho/6.0.23-foss-2019b-Python-3.7.4-Perl-5.30.0 Proteinortho/6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0
Last modified on 12th October 2020