Kent_tools 401-foss-2019b

There is a newer version of Kent_tools

Kent tools: collection of tools used by the UCSC genome browser.

Accessing Kent_tools 401-foss-2019b

To load the module for Kent_tools 401-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Kent_tools/401-foss-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Kent_tools website.

Dependencies

This version of Kent_tools has a direct dependency on: foss/2019b libpng/1.6.37-GCCcore-8.3.0 MariaDB/10.4.12-foss-2019b util-linux/2.34-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of Kent_tools is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 PASApipeline/2.4.1-foss-2019b Proteinortho/6.0.23-foss-2019b-Python-3.7.4-Perl-5.30.0 Proteinortho/6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0

Other Versions

These versions of Kent_tools are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
411-gompi-2020a 2020a

Last modified on 12th October 2020