Kraken2 2.0.9-beta-gompi-2019b-Perl-5.30.0

There is a newer install of Kraken2

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

Accessing Kraken2 2.0.9-beta-gompi-2019b-Perl-5.30.0

To load the module for Kraken2 2.0.9-beta-gompi-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Kraken2/2.0.9-beta-gompi-2019b-Perl-5.30.0

BEAR Apps Version




The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Downloading data with kraken2-build

If you receive errors messages about rsync failing to connect then try using the --use-ftp option instead.

More Information

For more information visit the Kraken2 website.


This version of Kraken2 has a direct dependency on: BLAST+/2.9.0-gompi-2019b gompi/2019b Perl/5.30.0-GCCcore-8.3.0 wget/1.20.1-GCCcore-8.3.0

Other Versions

These versions of Kraken2 are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2.1.2-gompi-2021b 2021b

Last modified on 4th June 2020