RootPainter 0.2.27.0-foss-2022a-CUDA-11.7.0

RootPainter is a GUI-based software tool for the rapid training of deep neural networks for use in biological image analysis. RootPainter uses a client-server architecture, allowing users with a typical laptop to utilise a GPU on a more computationally powerful server.

Accessing RootPainter 0.2.27.0-foss-2022a-CUDA-11.7.0

To load the module for RootPainter 0.2.27.0-foss-2022a-CUDA-11.7.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load RootPainter/0.2.27.0-foss-2022a-CUDA-11.7.0

BEAR Apps Version

2022a

Architectures

EL8-haswell (GPUs: NVIDIA P100) — EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30)

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • imagecodecs 2023.3.16
  • root_painter_trainer 0.2.27.0

More Information

For more information visit the RootPainter website.

Dependencies

This version of RootPainter has a direct dependency on: CUDA/11.7.0 foss/2022a Pillow/9.1.1-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 PyTorch/2.0.1-foss-2022a-CUDA-11.7.0 scikit-image/0.19.3-foss-2022a SciPy-bundle/2022.05-foss-2022a torchvision/0.15.2-foss-2022a-CUDA-11.7.0

Last modified on 28th June 2023