DSSP 4.4.0-gompi-2022a

DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries.

Accessing DSSP 4.4.0-gompi-2022a

To load the module for DSSP 4.4.0-gompi-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load DSSP/4.4.0-gompi-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the DSSP website.

Dependencies

This version of DSSP has a direct dependency on: gompi/2022a libcifpp/5.1.0-gompi-2022a libmcfp/1.2.4-GCCcore-11.3.0

Last modified on 4th August 2023