cell2location 0.1.3-foss-2022a-CUDA-11.7.0Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
Accessing cell2location 0.1.3-foss-2022a-CUDA-11.7.0
To load the module for cell2location 0.1.3-foss-2022a-CUDA-11.7.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load bear-apps/2022a
module load cell2location/0.1.3-foss-2022a-CUDA-11.7.0
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- cell2location 0.1.3
For more information visit the cell2location website.
This version of cell2location has a direct dependency on: CUDA/11.7.0 foss/2022a OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 scanpy/1.9.1-foss-2022a SciPy-bundle/2022.05-foss-2022a scvi-tools/0.20.1-foss-2022a-CUDA-11.7.0
|Version||BEAR Apps Version|
Last modified on 28th February 2023