BEAR Applications

LiBiNorm 2.5

LiBiNorm has been designed to perform gene expression analysis using RNA-seq data. It is command line and output compatible with htseq-count and also includes RNA-seq bias compensation tailored to Smart-seq2 library preparation as described in the paper: Modeling enzyme processivity reveals that RNA-Seq libraries are biased in characteristic and correctable ways

Accessing LiBiNorm 2.5

To load the module for LiBiNorm 2.5 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load LiBiNorm/2.5

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the LiBiNorm website.

Other Versions

These versions of LiBiNorm are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 11th May 2023