LiBiNorm 56aa414-foss-2018b

Deprecated: Use of this version of LiBiNorm is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of LiBiNorm

LiBiNorm has been designed to perform gene expression analysis using RNA-seq data. It is command line and output compatible with htseq-count and also includes RNA-seq bias compensation tailored to Smart-seq2 library preparation as described in the paper: Modeling enzyme processivity reveals that RNA-Seq libraries are biased in characteristic and correctable ways

Accessing LiBiNorm 56aa414-foss-2018b

To load the module for LiBiNorm 56aa414-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load LiBiNorm/56aa414-foss-2018b

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the LiBiNorm website.

Dependencies

This version of LiBiNorm has a direct dependency on: foss/2018b

Other Versions

These versions of LiBiNorm are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2.5 2022a

Last modified on 5th June 2019