napari 0.4.17-foss-2022a

napari is a fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy).

Accessing napari 0.4.17-foss-2022a

To load the module for napari 0.4.17-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load napari/0.4.17-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • app_model 0.1.4
  • build 0.10.0
  • cachey 0.2.1
  • commonmark 0.9.1
  • docstring_parser 0.15
  • freetype_py 2.4.0
  • hsluv 5.0.3
  • in_n_out 0.1.7
  • magicgui 0.7.2
  • mypy_extensions 1.0.0
  • napari 0.4.17
  • napari-console-0.0.8
  • napari-plugin-engine-0.2.0
  • napari-svg-0.1.8
  • npe2 0.7.0
  • numpydoc 1.5.0
  • Pint 0.22
  • psygnal 0.9.1
  • pydantic 1.10.8
  • pyproject_hooks 1.0.0
  • pytomlpp 1.0.13
  • rich 12.5.1
  • superqt 0.4.1
  • typer 0.9.0
  • vispy 0.11.0
  • wrapt 1.14.1

More Information

For more information visit the napari website.

Dependencies

This version of napari has a direct dependency on: dask/2022.12.0-foss-2022a foss/2022a imageio/2.22.2-foss-2022a IPython/8.5.0-GCCcore-11.3.0 matplotlib/3.5.2-foss-2022a PyOpenGL/3.1.6-GCCcore-11.3.0 PyQt5/5.15.5-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 PyYAML/6.0-GCCcore-11.3.0 Qtconsole/5.4.0-GCCcore-11.3.0 scikit-image/0.19.3-foss-2022a SciPy-bundle/2022.05-foss-2022a tqdm/4.64.0-GCCcore-11.3.0

Last modified on 6th June 2023