BiobankRead-Bash 3.1.1-20190507-foss-2022a

BiobankRead-Bash is a package that pulls out data from UKBiobank files and turns it into readily usable data-frames for any specified variables, with the option of filtering based on user-specified conditions. It provides faster and easier pre-processing tools in Python of UKBiobank clinical and phenotypical data, which is otherwise known for its intricate complexity.

Accessing BiobankRead-Bash 3.1.1-20190507-foss-2022a

To load the module for BiobankRead-Bash 3.1.1-20190507-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps/2022a
module load BiobankRead-Bash/3.1.1-20190507-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelakeEL8-icelake

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • BiobankRead-Bash-3.1.1-20190507

More Information

For more information visit the BiobankRead-Bash website.

Dependencies

This version of BiobankRead-Bash has a direct dependency on: BeautifulSoup/4.10.0-GCCcore-11.3.0 foss/2022a Python/3.10.4-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a Seaborn/0.12.1-foss-2022a

Last modified on 17th October 2023