WhatsHap 1.7-foss-2022aWhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Accessing WhatsHap 1.7-foss-2022a
To load the module for WhatsHap 1.7-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load bear-apps/2022a
module load WhatsHap/1.7-foss-2022a
BEAR Apps Version
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- pulp 2.7.0
- WhatsHap 1.7
- xopen 1.5.0
For more information visit the WhatsHap website.
This version of WhatsHap has a direct dependency on: Biopython/1.79-foss-2022a foss/2022a networkx/2.8.4-foss-2022a pyfaidx/0.7.1-GCCcore-11.3.0 Pysam/0.19.1-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 python-isal/1.1.0-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a Yasm/1.3.0-GCCcore-11.3.0
Last modified on 14th November 2023