Deprecated: Use of this version of WhatsHap is deprecated. More information on our Applications Support and Retention Policy.WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Accessing WhatsHap 0.18-foss-2018b-Python-3.6.6
To load the module for WhatsHap 0.18-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load WhatsHap/0.18-foss-2018b-Python-3.6.6
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- pyfaidx 0.5.5.2
- PyVCF 0.6.8
- whatshap 0.18
- xopen 0.7.3
For more information visit the WhatsHap website.
This version of WhatsHap has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 foss/2018b networkx/2.2-foss-2018b-Python-3.6.6 Pysam/0.15.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b
Last modified on 25th November 2019