ont-remora 2.0.0-foss-2022a-CUDA-11.7.0Methylation/modified base calling separated from basecalling. Remora primarily provides an API to call modified bases for basecaller programs such as Bonito. Remora also provides the tools to prepare datasets, train modified base models and run simple inference.
Accessing ont-remora 2.0.0-foss-2022a-CUDA-11.7.0
To load the module for ont-remora 2.0.0-foss-2022a-CUDA-11.7.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load bear-apps/2022a
module load ont-remora/2.0.0-foss-2022a-CUDA-11.7.0
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- iso8601 1.1.0
- lib_pod5 0.1.5
- pod5 0.1.5
- thop 0.1.1.2209072238
- vbz_h5py_plugin 1.0.1
For more information visit the ont-remora website.
This version of ont-remora has a direct dependency on: Arrow/8.0.0-foss-2022a-CUDA-11.7.0 CUDA/11.7.0 foss/2022a h5py/3.7.0-foss-2022a Pysam/0.20.0-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 python-parasail/1.3.3-foss-2022a PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 scikit-learn/1.1.2-foss-2022a SciPy-bundle/2022.05-foss-2022a tqdm/4.64.0-GCCcore-11.3.0
Last modified on 23rd January 2023