Trimmomatic 0.39-Java-11Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.
Accessing Trimmomatic 0.39-Java-11
To load the module for Trimmomatic 0.39-Java-11 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps/2021b
module load Trimmomatic/0.39-Java-11
BEAR Apps Version
EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the Trimmomatic website.
This version of Trimmomatic has a direct dependency on: Java/11
This version of Trimmomatic is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 KneadData/0.7.6-foss-2019b-Python-3.7.4-Java-11 shovill/1.1.0-foss-2019b-Python-3.7.4
These versions of Trimmomatic are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 10th June 2020