SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16
A toolkit for accessing and manipulating nanopore signal dataAccessing SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16
To load the module for SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load SquiggleKit/4a8abb5-foss-2019b-Python-2.7.16
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the SquiggleKit website.
Dependencies
This version of SquiggleKit has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-2.7.16 matplotlib/2.2.5-foss-2019b-Python-2.7.16 mlpy/3.5.0-foss-2019b-Python-2.7.16 ont-fast5-api/2.0.1-foss-2019b-Python-2.7.16 Python/2.7.16-GCCcore-8.3.0 scikit-learn/0.20.4-foss-2019b-Python-2.7.16 Scrappie/1.4.1-foss-2019b-Python-2.7.16
Other Versions
These versions of SquiggleKit are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
1.0.0-foss-2018b-Python-2.7.15 | 2018b |
Last modified on 28th July 2020