SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16A toolkit for accessing and manipulating nanopore signal data
Accessing SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16
To load the module for SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load SquiggleKit/4a8abb5-foss-2019b-Python-2.7.16
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the SquiggleKit website.
This version of SquiggleKit has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-2.7.16 matplotlib/2.2.5-foss-2019b-Python-2.7.16 mlpy/3.5.0-foss-2019b-Python-2.7.16 ont-fast5-api/2.0.1-foss-2019b-Python-2.7.16 Python/2.7.16-GCCcore-8.3.0 scikit-learn/0.20.4-foss-2019b-Python-2.7.16 Scrappie/1.4.1-foss-2019b-Python-2.7.16
These versions of SquiggleKit are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 28th July 2020