ont-fast5-api 2.0.1-foss-2019b-Python-2.7.16ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore fast5 file format.
Accessing ont-fast5-api 2.0.1-foss-2019b-Python-2.7.16
To load the module for ont-fast5-api 2.0.1-foss-2019b-Python-2.7.16 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load ont-fast5-api/2.0.1-foss-2019b-Python-2.7.16
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- progressbar33 2.4
For more information visit the ont-fast5-api website.
This version of ont-fast5-api has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-2.7.16 Python/2.7.16-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-2.7.16
This version of ont-fast5-api is a direct dependent of: SquiggleKit/4a8abb5-foss-2019b-Python-2.7.16
These versions of ont-fast5-api are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 28th July 2020