BEAR Applications

SquiggleKit 1.0.0-foss-2018b-Python-2.7.15

Deprecated: Use of this version of SquiggleKit is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of SquiggleKit

A toolkit for accessing and manipulating nanopore signal data

Accessing SquiggleKit 1.0.0-foss-2018b-Python-2.7.15

To load the module for SquiggleKit 1.0.0-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load SquiggleKit/1.0.0-foss-2018b-Python-2.7.15

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the SquiggleKit website.

Dependencies

This version of SquiggleKit has a direct dependency on: foss/2018b h5py/2.8.0-foss-2018b-Python-2.7.15 matplotlib/2.2.3-foss-2018b-Python-2.7.15 mlpy/3.5.0-foss-2018b-Python-2.7.15 Python/2.7.15-foss-2018b scikit-learn/0.20.0-foss-2018b-Python-2.7.15

Other Versions

These versions of SquiggleKit are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 19th June 2019