ukbtools 0.11.3-foss-2019b-R-3.6.2

A set of tools to create a UK Biobank dataset from a UKB fileset (.tab, .r, .html), visualize primary demographic data for a sample subset, query ICD diagnoses, retrieve genetic metadata, read and write standard file formats for genetic analyses.

Accessing ukbtools 0.11.3-foss-2019b-R-3.6.2

To load the module for ukbtools 0.11.3-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load ukbtools/0.11.3-foss-2019b-R-3.6.2

BEAR Apps Version

2019b

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • ukbtools 0.11.3

More Information

For more information visit the ukbtools website.

Dependencies

This version of ukbtools has a direct dependency on: foss/2019b R/3.6.2-foss-2019b

Required By

This version of ukbtools is a direct dependent of: BEAR-R-bio/2019b-foss-2019b-R-3.6.2

Last modified on 2nd October 2020