Unicycler 0.5.0-gompi-2021b

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline.

Accessing Unicycler 0.5.0-gompi-2021b

To load the module for Unicycler 0.5.0-gompi-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load Unicycler/0.5.0-gompi-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Unicycler website.

Dependencies

This version of Unicycler has a direct dependency on: BLAST+/2.12.0-gompi-2021b gompi/2021b Python/3.9.6-GCCcore-11.2.0 Racon/1.5.0-GCCcore-11.2.0 SPAdes/3.15.3-GCC-11.2.0

Required By

This version of Unicycler is a direct dependent of: ecc_finder/1.0.0_20221007_67d06f3-foss-2021b

Last modified on 17th October 2022