A reference implementation of the BGEN format in C++, originally sourced from the qctool implementation. In addition three utilities - bgenix, which provides indexed access to BGEN files, cat-bgen which efficiently concatenates BGEN files, and edit-bgen which is used to manipulate BGEN metadata - are provided. See the wiki for documentation on these programs.

More Information

For more information visit the BGEN website.

Available Versions

These versions of BGEN are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.1.6-GCCcore-8.3.0 2019b