GBJ 0.5.0-foss-2019b-R-3.6.2GBJ offers the Generalized Berk-Jones (GBJ) test for set-based inference in genetic association studies. The GBJ is designed as an alternative to tests such as Berk-Jones (BJ), Higher Criticism (HC), Generalized Higher Criticism (GHC), Minimum p-value (minP), and Sequence Kernel Association Test (SKAT).
Accessing GBJ 0.5.0-foss-2019b-R-3.6.2
To load the module for GBJ 0.5.0-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load GBJ/0.5.0-foss-2019b-R-3.6.2
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- GBJ 0.5.0
For more information visit the GBJ website.
This version of GBJ has a direct dependency on: foss/2019b R/3.6.2-foss-2019b
This version of GBJ is a direct dependent of: UTMOST/88e9d1d-foss-2019b-Python-2.7.16-R-3.6.2
Last modified on 8th February 2021