Beagle 5.1-25Nov19.28d-Java-11

BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thousands of markers genotyped on thousands of samples.

Accessing Beagle 5.1-25Nov19.28d-Java-11

To load the module for Beagle 5.1-25Nov19.28d-Java-11 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Beagle/5.1-25Nov19.28d-Java-11

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Using Beagle

Once the Beagle module is loaded, you can call Beagle directly with the command beagle.

More Information

For more information visit the Beagle website.

Dependencies

This version of Beagle has a direct dependency on: Java/11

Last modified on 12th December 2019