Bio-SearchIO-hmmer 1.7.3-GCC-11.2.0

Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible with both version 2 and version 3 of the HMMER package from http://hmmer.org.

Accessing Bio-SearchIO-hmmer 1.7.3-GCC-11.2.0

To load the module for Bio-SearchIO-hmmer 1.7.3-GCC-11.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps/2021b
module load Bio-SearchIO-hmmer/1.7.3-GCC-11.2.0

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-haswell — EL8-icelake

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Bio-SearchIO-hmmer website.

Dependencies

This version of Bio-SearchIO-hmmer has a direct dependency on: BioPerl/1.7.8-GCCcore-11.2.0 GCC/11.2.0 Perl/5.34.0-GCCcore-11.2.0

Required By

This version of Bio-SearchIO-hmmer is a direct dependent of: prokka/1.14.5-gompi-2021b

Last modified on 10th February 2023