Pychopper 2.7.10-foss-2024a

A tool to identify, orient, trim and rescue full length cDNA reads.

Accessing Pychopper 2.7.10-foss-2024a

To load the module for Pychopper 2.7.10-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load Pychopper/2.7.10-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• Pychopper 2.7.10
• tqdm 4.66.1

More Information

For more information visit the Pychopper website.

Dependencies

This version of Pychopper has a direct dependency on: Biopython/1.84-gfbf-2024a edlib/1.3.9.post1-GCC-13.3.0 foss/2024a matplotlib/3.9.2-gfbf-2024a parasail/2.6.2-GCC-13.3.0 Pysam/0.22.1-GCC-13.3.0 Python/3.12.3-GCCcore-13.3.0 python-parasail/1.3.4-foss-2024a SciPy-bundle/2024.05-gfbf-2024a Seaborn/0.13.2-gfbf-2024a Sphinx-RTD-Theme/3.1.0-GCCcore-13.3.0

Last modified on 15th May 2026