GlimmerHMM 3.0.4c-GCC-8.3.0

GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models.

Accessing GlimmerHMM 3.0.4c-GCC-8.3.0

To load the module for GlimmerHMM 3.0.4c-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load GlimmerHMM/3.0.4c-GCC-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the GlimmerHMM website.

Dependencies

This version of GlimmerHMM has a direct dependency on: GCC/8.3.0

Required By

This version of GlimmerHMM is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Last modified on 12th October 2020